HiBC: Human Intestinal Bacterial Collection
Isolates:
as of 2024-06-16
Species:
as of 2024-06-16
About HiBC
The Human intestinal Bacterial Collection (HiBC) is a collection of bacterial strains, isolated from the human gut for which 16S rRNA gene sequences, genome sequences and culture conditions are made available to the research community. In addition to previously described bacteria, we include strains that represent novel species which have been taxonomically described and validly named, or will be in the future. This collection will be updated regularly.How to navigate the resource
We provide different layers of information accessible via corresponding tabs at the top of the page; with this, users can explore the current content HiBC:- taxonomy of the isolates
- cultivation metadata
- 16S rRNA gene and genome sequences
Strain availability
All isolates have been deposited at the DSMZ under the bulk-submission system proposed in Hitch et al (2024). As such, each isolate has received a StrainInfo DOI which can be used to monitor the 'Strain status', which confirms the current stage of deposition. Once available, the DSMZ will assign a DSM number to the isolate and it can be requested. Type strains for novel taxa described at part of this, or previous work, are also available in at least one additional collection. Please check the StrainInfo link of the isolate of interest to find further details. For further inquires regarding strain availability, please contact AG Clavel.Data availability
We aim to produce research data that follows the FAIR principles (Findable, Accessible, Interoperable, Reusable; Wilkinson et al. 2016). Therefore, we collect standardized metadata regarding the culture and isolation, sequencing, genome assembly process and the biological sequences. We are supported in that process by the NFDI4Microbiota a German consortium of the National Research Data Infrastructure that supports and train the microbiology community for better research data production and management.Disclaimer
If you make use of HiBC, please cite our preprint as follows:Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Johanna Bosch, Selina Nüchtern, Nicole Treichel, Marko Baloh, Soheila Razavi, Afrizal Afrizal, Ntana Kousetzi, Andrea M. Aguirre, David Wylensek, Amy Coates, Susan A. V. Jennings, Atscharah Panyot, Alina Viehof, Matthias A. Schmitz, Maximilian Stuhrmann, Evelyn C. Deis, Kevin Bisdorf, Thorsten Cramer, Artur Lissin, Isabel Schober, Julius Witte, Thomas Riedel, Marie Wende, Katrin A. Winter, Alessandra Riva, Stefanie Trinh, Laura Mitchell, Jonathan Hartman, David Berry, Jochen Seitz, Lukas C. Bossert, Thorsten Allers, Till Strowig, Birte Abt, Lorenz C. Reimer, Jörg Overmann, Thomas Clavel (2024). "Broad diversity of human gut bacteria accessible via a traceable strain deposition system". bioRxiv. 2024.06.20.599854. doi: 10.1101/2024.06.20.599854
Taxonomy of the HiBC isolates
Browse through the complete list of the isolates in the table below. Use the buttons beneath the table to copy or download the displayed values.The isolates are uniquely identified by a digital object identifier (doi) issued by StrainInfo that provides resolution of microbial strain identifiers from different culture collections.
If you want to have more information on a specific isolate, please select your isolate in the table and click on the button on the right.
An isolate of interest?
Cultivation of the HiBC isolates
On this tab we detail the cultivation conditions required to best grow each HiBC isolate. The graph on the right highlights the media most frequently identified as the best media to grow individual strains. A further media were observed only once.Use the buttons beneath the table to copy or download the displayed values.
Assemblies of the HiBC isolates
Explore the genome assemblies of the isolates via the two interactive plots and the table below.Use the buttons beneath the table to copy or download the displayed values.